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Feb 12 2014 08:24pm
Quote (Balla @ Feb 12 2014 12:56am)
http://www.eurekalert.org/pub%5Freleases/2014-02/uob-nrs021014.php

Pretty cool, but I have some thoughts.
As far as possible mechanisms, lactate produced in astrocytes is transported to neurons via the lactate transporter (MCT1), which triggers depolarization and excitation of neurons.
It's involved on glucose sensing in the hypothalamus, regulating energy and hunger. Usage of glucose leads to the lactate I talked about in the first thought, and the transportation. These shifts modulate neuropeptide expression (shifts sensed largely by Glucokinase), example - hypoglycemia/depleted reserves can induce hypothalamic AMPK expression, leading to NPY and AgRP (and vice versa) expression increased and thus hunger.
As for this study, it makes sense. Lactate production would indicate glycogen depletion and glucose usage. Norepinephrine/epi induce glycogenolysis and such to increase glucose concentrations.
It also fits in w/ my first statement. Norepi/epi (sympathetic nervous system mediators) innervate ghrelin, the main gut hunger hormone, which also acts at the ARC of the hypothalamus to shift to hunger pathways, as described above.
At least, that's how I think about it, iirc


Awesome, here's the full study too! Instead of just a write up
http://www.nature.com/ncomms/2014/140211/ncomms4284/full/ncomms4284.html
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Feb 16 2014 11:13pm
http://mobile.journals.lww.com/nsca-jscr/_layouts/oaks.journals.mobile/articleviewer.aspx?year=9000&issue=00000&article=97467

Protein expression differences from overtraining

Most striking is the significant up regulation of MAFbx.
It's a potent catabolic protein, it utilizes the proteasome system.. Aka it tags something (our muscle protein fibers in this case) with ubiquitin, which is then degraded by the proteasome intracellularly.

The other responses are expected. Myod and myogenin are also degraded via the proteasome too! So, I do wonder if those particularly are only down regulated from increased degradation from MAFbx.
The authors apparently, don't seem to have done PCR to actually measure my question, only western blot. I feel it's important in any experiment measuring protein levels and such, to do both such tests, to see it from a transcription view, as well as translated one
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Feb 20 2014 10:41pm
Quote (Balla @ Feb 17 2014 12:13am)
http://mobile.journals.lww.com/nsca-jscr/%5Flayouts/oaks.journals.mobile/articleviewer.aspx?year=9000&issue=00000&article=97467

Protein expression differences from overtraining

Most striking is the significant up regulation of MAFbx.
It's a potent catabolic protein, it utilizes the proteasome system.. Aka it tags something (our muscle protein fibers in this case) with ubiquitin, which is then degraded by the proteasome intracellularly.

The other responses are expected. Myod and myogenin are also degraded via the proteasome too! So, I do wonder if those particularly are only down regulated from increased degradation from MAFbx.
The authors apparently, don't seem to have done PCR to actually measure my question, only western blot. I feel it's important in any experiment measuring protein levels and such, to do both such tests, to see it from a transcription view, as well as translated one


If you simply care about up regulation of a specific protein there is no need to do pcr, bc while there may be changes in transcription, the bottom line will still be defined by the protein count aka what gets translated, which is probably why they didn't do pcr as it would take much time and effort to develop a protocol to quantify it for no reason
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Feb 20 2014 10:56pm
Quote (Bubbler @ Feb 21 2014 12:41am)
If you simply care about up regulation of a specific protein there is no need to do pcr, bc while there may be changes in transcription, the bottom line will still be defined by the protein count aka what gets translated, which is probably why they didn't do pcr as it would take much time and effort to develop a protocol to quantify it for no reason


Well you're right that the question I'm asking isn't all too important.. In this sense actually they were only wondering about the protein levels themselves and that is what's important, so I know what you mean. I'm just curious to know where the down regulation occurs lol. And PCR isn't much effort.. Maybe 7 hours?
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Feb 20 2014 11:10pm
Quote (Balla @ Feb 20 2014 11:56pm)
Well you're right that the question I'm asking isn't all too important.. In this sense actually they were only wondering about the protein levels themselves and that is what's important, so I know what you mean. I'm just curious to know where the down regulation occurs lol. And PCR isn't much effort.. Maybe 7 hours?


The actual pcr technique wouldn't take that long but this isn't some cookie cutter experiment you do in your molecular bio or what have you class where every step has been done before, meaning defining an adequate protocol will take a lot of time

However, you are right that it would be good to gain insight into if Myod and myogenin are being downregulated at a transcriptional level so you can rule it out and confirm/deny that ubiquitination via MAFbx is the primary method of downregulation


Edit: keep in mind, for the sake of getting a publication ASAP a lot of times it's better to get to the bottom line and then work out all the specific questions later

This post was edited by Bubbler on Feb 20 2014 11:17pm
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Feb 20 2014 11:17pm
Quote (Bubbler @ Feb 21 2014 01:10am)
The actually pcr technique wouldn't take that long but this isn't some cookie cutter experiment you do in your molecular bio or what have you class where every step has been done before, meaning defining an adequate protocol will take a lot of time

However, you are right that it would be good to gain insight into if Myod and myogenin are being downregulated at a transcriptional level so you can rule it out and confirm/deny that ubiquitination via MAFbx is the primary method of downregulation


Oh no doubt. I work in a research lab now and the difference between that and lab classes is a joke lol. In class trying to finish PCR/ELISA in a short time, most steps predone for you or after you, etc.. It's silly. We do a lot of all of that though, concentrating mainly on TLRs, NFkB, MyD88 and those signaling pathways and chlamydia infection + stress/concentrating on norepinephrine right now.
But yes that's what I mean. Not that it'd do much good besides quenching curiosity I guess

E: that's actually a good point. Would help with grants needed to continue that research

This post was edited by Balla on Feb 20 2014 11:19pm
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Feb 22 2014 01:54pm
https://www.ncbi.nlm.nih.gov/m/pubmed/24550991/

"Stimulation of neural stem cell proliferation by inhibition of phosphodiesterase 5"

Pretty awesome tbh.
Caffeine is a non selective PDE inhibitor, so it increases this cGMP and cAMP. No wonder it's been shown to help long term memory
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Feb 22 2014 02:08pm
Some articles on meal frequency and relevancy of eating breakfast. Nothing new, everyone knows this stuff, just wanted to make it readily available.



http://www.ncbi.nlm....pubmed/14513075



Breakfast skipping reduced overall weight in overweight students, with out other variables controlled.

This one is fairly weak as the total intake isn't controlled..



http://www.ncbi.nlm..../pubmed/9155494



This one essentially says that some studies do show an inverse relationship between meal frequency and adiposity, but these studies don't control calorie intake...which is ridiculous...



...and concludes that no studies have ever shown that on controlled calorie diets multiple meals have any advantage over one meal, and in fact, they have yielded the same results. Thus defeating meal timing.



http://www.ncbi.nlm....pubmed/19943985



This is only the abstract. It essentially says, more favorable gut peptide profiles do not exist in higher meal frequencies. Weight loss is NOT enhanced by higher meal frequency alone, and better appetite control or diet adherence has not been shown in higher meal frequencies.



Ghrelin levels also remained unaltered by increasing meal frequency.



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Feb 22 2014 04:49pm
Quote (Afficionado @ Feb 22 2014 04:08pm)
Some articles on meal frequency and relevancy of eating breakfast. Nothing new, everyone knows this stuff, just wanted to make it readily available.



http://www.ncbi.nlm....pubmed/14513075



Breakfast skipping reduced overall weight in overweight students, with out other variables controlled.

This one is fairly weak as the total intake isn't controlled..



http://www.ncbi.nlm..../pubmed/9155494



This one essentially says that some studies do show an inverse relationship between meal frequency and adiposity, but these studies don't control  calorie intake...which is ridiculous...



...and concludes that no studies have ever shown that on controlled calorie diets multiple meals have any advantage over one meal, and in fact, they have yielded the same results. Thus defeating meal timing.



http://www.ncbi.nlm....pubmed/19943985



This is only the abstract. It essentially says, more favorable gut peptide profiles do not exist in higher meal frequencies. Weight loss is NOT enhanced by higher meal frequency alone, and better appetite control or diet adherence has not been shown in higher meal frequencies.



Ghrelin levels also remained unaltered by increasing meal frequency.


Eh I don't really agree with the last bit. I don't think any gut hormonal shift is necessarily beneficial, but overtime on a specific meal frequency, your body will adapt and shift rhythmic secretion of hormones, such as ghrelin. Like with IF, ghrelin becomes a bit lower during the early parts of the day vs normally eating then, but later in the day, you'll get large spikes of ghrelin reaching a zenith. This isn't "bad" or "good" but it does happen, and is probably intuitive if you think about it
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Feb 22 2014 04:58pm
Quote (Balla @ Feb 22 2014 10:49pm)
Eh I don't really agree with the last bit. I don't think any gut hormonal shift is necessarily beneficial, but overtime on a specific meal frequency, your body will adapt and shift rhythmic secretion of hormones, such as ghrelin. Like with IF, ghrelin becomes a bit lower during the early parts of the day vs normally eating then, but later in the day, you'll get large spikes of ghrelin reaching a zenith. This isn't "bad" or "good" but it does happen, and is probably intuitive if you think about it


Maybe it's a bit misleading because it is an 8 week time period, but i don't think that invalidates anything.
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