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Those are vaccines which have been properly tested for years, if not decades, based on technology which is well-understood and for which we have sufficient data on long-term risks. None of that is true for the covid vaccines.
Claiming mRNA research hasn't been researched and well understood for years is just blatantly incorrect. It's been researched since the 60s.
Anthrax vaccines have some insane long-term side effects that vary heavily, but get muddied results since deployed soldiers are usually in hazardous environments.
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The fringe right was blowing the side effects of the covid vax ("clot shot") as well as the risks of the mRNA technology way out of proportion, don't get me wrong, but these side effects and risks do exist and it is perfectly reasonable for a healthy person to not want to subject oneself to them.
You're fine not subjecting yourself to them, but that also means others do not have to subject themselves to you during a worldwide crisis. Same reason you can't go to specific countries without their vaccine and shot requirements since you'll be needlessly spreading diseases.
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Then again: the covid vaccines did next to nothing to prevent transmission or infection, and this was also well-known by the time most mandates went into effect. Virtually the entire rationale for the vaccine mandates fell apart the second we found out that the protection against transmission wanes within 6 weeks when dealing with the delta or omikron variants of the virus.
Vaccines are the entire reason we got weaker strains of the virus, that's how viruses work. They adapt to spread more efficiently once we get vaccines and become immune to the more dangerous symptoms. That's why the flu still exists despite people getting vaccines seasonally, and also why the bubonic plague is still around to this day.
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There can be valid reasons to support guidelines and mandates which infringe on bodily autonomy. An example would be the vaccination against measles. The problem is just that no such reason existed in the case of the covid vaccines, AND the public health community as well as the politicians knew it, AND they still went ahead with baseless mandates... all because they had overadvertized the vaccines and didn't want to lose face. And probably also because they didn't trust the public to understand a nuanced reality*.
*Namely that against the wuhan strain, the covid vaccines were super effective at preventing hospitalization and death and also quite effective against transmission. With regard to the delta and omikron variants, which were dominant when vaccine mandates were debated, there was still a strong reduction of hospitalization and death rates, albeit not as great as against the earlier variants, but the protection against transmission waned within a handful of weeks.
I'd argue the opposite using some of the reasons you used above: We had(and still have) no idea the exact long term effects of Covid exposure to the general populace. We've had people lose their taste, sight, smell, "Covid fog", "Covid lung" and right now it's being described as Long Covid with no real measurement on if it's permanent or not. Doing drastic measures was definitely warranted considering how easily spread Covid was.